Commontk - User contributions [en]

Documentation/CLI In Context

2013-09-18T13:04:13Z

Msermesant: /* Events */

This page lists some example and notes on different integration of CLI modules in different frameworks including CTK (see [[Documentation/Command_Line_Interface]]). The first interoperability testing was done during the [http://www.creatis.insa-lyon.fr/Interoperability_workshop third] VPH NoE Imaging workshop hold in Lyon, France on October 22-23, 2012. It will be continued in consecutive hackfests. The aim is to try to plug in CLI modules in CLI compatible frameworks and come up with possible improvement of the CLI standard, advice to CLI module and CLI framework developers.

== Events ==

* [[CTK-Hackfest-Nov-2011|CTK Hackfest]] in Sophia Antipolis, France in November 2011
** Preliminary work to integrate CLI into Gimias
* [[CTK-Hackfest-Jul-2012|CTK Hackfest]] in Boston, USA in July 2012
** Preliminary work to integrate CLI into MITK
* [http://www.creatis.insa-lyon.fr/Interoperability_workshop 3rd VPH NoE Imaging workshop] in Lyon, France on October 22-23, 2012
** First [[#Interoperability_tests|Interoperability tests]] with CTK, Gimias, NiftyView and Slicer
* [[CTK-Hackfest-Dec-2012|CTK Hackfest]] in Bologna, Italy on December, 2012
** Preliminary work to integrate CLI into medInria, MAF3
** Semi-Automatic framework CLI integration tests

== Interoperability tests ==

These first tests mainly concern the integration of niftyreg (registration algorithms from UCL). The different stages of integration are: load, execute and results. Meaning that the CLI module can be loaded. executed and provides the same results as if it was run only from the command line. The problems we encountered were:

* Gimias does not support to have a `default` element different that `None` for the output, not sure about the `advanced` option for the `parameters` element
* niftyreg was using `fileExtensions` with stars (`*.nii`) which is not supported by neither Gimias nor Slicer (the star is directly used in the file name)
* The default output folder should be set to the user folder and not the running one, otherwise the CLI module can crash because they were denied access to write in that folder (for example `Program Files` under Windows)
* What to do with CLI modules that have dependencies on shared libraries with the platform but of different versions? Platforms should have the option to only use the libraries shipped with the CLI module
* Platforms should align the way they treat data since if two load data differently, the same CLI module could give different results

It would be interesting to create test CLI modules for these integration tests. For example one that exposes all possible types of options, one running a simple algorithm without any dependencies (as niftyreg) and one with dependencies.

Some thoughts on the tested platforms:
* Niftyview has nice controls on the way CLI modules are found and loaded (control on the `XML` validation)
* Slicer has a nice display of the loaded and non loaded CLI modules (appear in red, there could be more explanation why the loading failed)

== Snapshots ==

Here are the snapshots of niftyreg on the different platforms:

* CTK command line module explorer

[[File:Niftyreg-ctk.png|400px]]

* Slicer

[[File:Niftyreg-slicer.png|400px]]

* NiftyView

[[File:Niftyreg-niftyview.png|400px]]

* GIMIAS

[[File:Niftyreg-gimias.png|400px]]

* medInria

[[File:medinria-cli-niftyreg.png|400px]]

Documentation/CLI In Context

2013-09-18T13:03:45Z

Msermesant: /* Snapshots */

This page lists some example and notes on different integration of CLI modules in different frameworks including CTK (see [[Documentation/Command_Line_Interface]]). The first interoperability testing was done during the [http://www.creatis.insa-lyon.fr/Interoperability_workshop third] VPH NoE Imaging workshop hold in Lyon, France on October 22-23, 2012. It will be continued in consecutive hackfests. The aim is to try to plug in CLI modules in CLI compatible frameworks and come up with possible improvement of the CLI standard, advice to CLI module and CLI framework developers.

== Events ==

* [[CTK-Hackfest-Nov-2011|CTK Hackfest]] in Sofia Antipolis, France in November 2011
** Preliminary work to integrate CLI into Gimias
* [[CTK-Hackfest-Jul-2012|CTK Hackfest]] in Boston, USA in July 2012
** Preliminary work to integrate CLI into MITK
* [http://www.creatis.insa-lyon.fr/Interoperability_workshop 3rd VPH NoE Imaging workshop] in Lyon, France on October 22-23, 2012
** First [[#Interoperability_tests|Interoperability tests]] with CTK, Gimias, NiftyView and Slicer
* [[CTK-Hackfest-Dec-2012|CTK Hackfest]] in Bologna, Italy on December, 2012
** Preliminary work to integrate CLI into medInria, MAF3
** Semi-Automatic framework CLI integration tests

== Interoperability tests ==

These first tests mainly concern the integration of niftyreg (registration algorithms from UCL). The different stages of integration are: load, execute and results. Meaning that the CLI module can be loaded. executed and provides the same results as if it was run only from the command line. The problems we encountered were:

* Gimias does not support to have a `default` element different that `None` for the output, not sure about the `advanced` option for the `parameters` element
* niftyreg was using `fileExtensions` with stars (`*.nii`) which is not supported by neither Gimias nor Slicer (the star is directly used in the file name)
* The default output folder should be set to the user folder and not the running one, otherwise the CLI module can crash because they were denied access to write in that folder (for example `Program Files` under Windows)
* What to do with CLI modules that have dependencies on shared libraries with the platform but of different versions? Platforms should have the option to only use the libraries shipped with the CLI module
* Platforms should align the way they treat data since if two load data differently, the same CLI module could give different results

It would be interesting to create test CLI modules for these integration tests. For example one that exposes all possible types of options, one running a simple algorithm without any dependencies (as niftyreg) and one with dependencies.

Some thoughts on the tested platforms:
* Niftyview has nice controls on the way CLI modules are found and loaded (control on the `XML` validation)
* Slicer has a nice display of the loaded and non loaded CLI modules (appear in red, there could be more explanation why the loading failed)

== Snapshots ==

Here are the snapshots of niftyreg on the different platforms:

* CTK command line module explorer

[[File:Niftyreg-ctk.png|400px]]

* Slicer

[[File:Niftyreg-slicer.png|400px]]

* NiftyView

[[File:Niftyreg-niftyview.png|400px]]

* GIMIAS

[[File:Niftyreg-gimias.png|400px]]

* medInria

[[File:medinria-cli-niftyreg.png|400px]]

File:Medinria-cli-niftyreg.png

2013-09-18T13:02:51Z

Msermesant: CLI integration in medInria

CLI integration in medInria

The Team

2012-02-16T13:14:24Z

Msermesant: /* Grants, Fundings and Sponsors */

=Institutions=
{| cellspacing="20"
|[[File:Dkfz_logo_en.gif|200px|link=http://www.dkfz.de]]
|[[File:GeorgetownUniversity_logo_en.svg|200px|link=http://www.georgetown.edu/]]
|[[File:Kitware_logo_en.png|200px|link=http://www.kitware.com]]
|[[File:Inria.jpg|200px|link=http://www.inria.fr]]
|-
|[[File:Isomics_logo_en.png|200px|link=http://www.isomics.com]]
|[[File:Mannheim_logo_ge.png|200px|link=http://www.uni-mannheim.de]]
|[[File:Offis_logo_en.gif|200px|link=http://dicom.offis.de]]
|[[File:RadPharm_logo_en.jpg|200px]]
|-
|[[File:Siemens_logo_en.jpg|200px|link=http://www.usa.siemens.com/en/about_us/research/home.htm]]
|[[File:SPL_logo.gif|70px]][http://www.spl.harvard.edu Surgical Planning Laboratory]
|[[File:Upf_logo_it.gif|200px|link=http://www.upf.edu]]
|[[File:WashingtonUniversity_logo_en.png|200px|link=http://www.mir.wustl.edu/]]
|}

=Pro tempore steering committee=
* Hans-Peter Meinzer, German Cancer Research Center, Heidelberg, Germany ''(Catalyst of the CTK effort)''
* Ron Kikinis, Harvard Medical School, Boston, MA, USA ''(Meeting Chair)''
* Ivo Wolf, Mannheim University of Applied Sciences, Institute for Medical Informatics, Mannheim, Germany
* Marco Nolden, German Cancer Research Center, Heidelberg, Germany
* Steve Pieper, Isomics, Cambridge, MA, USA
* Kevin Cleary, Georgetown University, Washington DC, USA
** Patrick Cheng, Georgetown University, Washington DC, USA
** Ziv Yaniv, Georgetown University, Washington DC, USA
* Lawrence Tarbox, Mallinckrodt Institute of Radiology, St.Louis, MO, USA
* Stephen Aylward, Kitware Inc., Carborro, NC, USA
** Julien Finet, Kitware Inc.
** Jean-Christophe Fillion-Robin, Kitware Inc.
** Julien Jomier, Kitware Inc.
* Will Schroeder, Kitware Inc., Clifton Park, NY, USA
* Marco Viceconti, Laboratorio di Tecnologia Medica, Bologna, Italy
** Daniele Giunchi, SCS - B3C , Bologna Italy
** Paolo Quadrani, SCS - B3C , Bologna Italy
* Michael Onken, OFFIS DICOM Team, Oldenburg, Germany
* Nicholas Ayache, Sophia Antipolis, Inria, France
** Olivier Clatz, Sophia Antipolis, Inria, France
** Maxime Sermesant, Sophia Antipolis, Inria, France
** Pierre Fillard, Sophia Antipolis, Inria, France
* Gianluca Paladini, Siemens Corporate Research, Princeton, NJ, USA
* David Clunie, RadPharm, Princeton, NJ, USA

=Projects contributing to CTK=
{| style="text-align:center"
|[[File:3DSlicer_logo_en.png|200px|link=http://www.slicer.org]] [http://www.slicer.org 3D Slicer]
|[[File:Gimias_logo_en.png|200px|link=http://www.gimias.org]] [http://www.gimias.org Gimias]
|[[File:MAF3_logo_en.png|200px|link=https://www.biomedtown.org/biomed_town/maf3]] [https://www.biomedtown.org/biomed_town/maf3 Maf]
|[[File:MedInria.png|200px|link=http://med.inria.fr]] [http://med.inria.fr medInria]
|[[File:Mitk_logo_en.png|200px|link=http://www.mitk.org]] [http://www.mitk.org Mitk]
|}

=Grants, Fundings and Sponsors=
{|
|[[File:AFRL_logo.png|70px]] Air Force Research Laboratories under Phases I and II of the SBIR contract "[http://www.vtk.org/Wiki/Maverick Generating Labeled Voxelization for Numerical Simulation]," Topic: AF06-034, Contract #: FA8650-07-C-6756
|-
|[[File:ARRA_logo.png|70px]] [http://wiki.na-mic.org/Wiki/index.php/Projects:ARRA:SlicerUI ARRA supplement] to [http://nac.spl.harvard.edu NAC]
|-
|[[File:NAC_logo.gif|70px]] [http://nac.spl.harvard.edu Neuroimage Analysis Center]
|-
|[[File:NA-MIC_logo.jpg|70px]] [http://www.na-mic.org National Alliance for Medical Image Computing]
|-
|[[File:logo_vph_crop.jpg|70px|link=http://www.vph-noe.eu/]] [http://www.vph-noe.eu/ Virtual Physiological Human Network of Excellence]
|}

File:VPH logo.jpg

2012-02-16T13:14:01Z

Msermesant:

The Team

2012-02-16T13:07:46Z

Msermesant: /* Pro tempore steering committee */

=Institutions=
{| cellspacing="20"
|[[File:Dkfz_logo_en.gif|200px|link=http://www.dkfz.de]]
|[[File:GeorgetownUniversity_logo_en.svg|200px|link=http://www.georgetown.edu/]]
|[[File:Kitware_logo_en.png|200px|link=http://www.kitware.com]]
|[[File:Inria.jpg|200px|link=http://www.inria.fr]]
|-
|[[File:Isomics_logo_en.png|200px|link=http://www.isomics.com]]
|[[File:Mannheim_logo_ge.png|200px|link=http://www.uni-mannheim.de]]
|[[File:Offis_logo_en.gif|200px|link=http://dicom.offis.de]]
|[[File:RadPharm_logo_en.jpg|200px]]
|-
|[[File:Siemens_logo_en.jpg|200px|link=http://www.usa.siemens.com/en/about_us/research/home.htm]]
|[[File:SPL_logo.gif|70px]][http://www.spl.harvard.edu Surgical Planning Laboratory]
|[[File:Upf_logo_it.gif|200px|link=http://www.upf.edu]]
|[[File:WashingtonUniversity_logo_en.png|200px|link=http://www.mir.wustl.edu/]]
|}

=Pro tempore steering committee=
* Hans-Peter Meinzer, German Cancer Research Center, Heidelberg, Germany ''(Catalyst of the CTK effort)''
* Ron Kikinis, Harvard Medical School, Boston, MA, USA ''(Meeting Chair)''
* Ivo Wolf, Mannheim University of Applied Sciences, Institute for Medical Informatics, Mannheim, Germany
* Marco Nolden, German Cancer Research Center, Heidelberg, Germany
* Steve Pieper, Isomics, Cambridge, MA, USA
* Kevin Cleary, Georgetown University, Washington DC, USA
** Patrick Cheng, Georgetown University, Washington DC, USA
** Ziv Yaniv, Georgetown University, Washington DC, USA
* Lawrence Tarbox, Mallinckrodt Institute of Radiology, St.Louis, MO, USA
* Stephen Aylward, Kitware Inc., Carborro, NC, USA
** Julien Finet, Kitware Inc.
** Jean-Christophe Fillion-Robin, Kitware Inc.
** Julien Jomier, Kitware Inc.
* Will Schroeder, Kitware Inc., Clifton Park, NY, USA
* Marco Viceconti, Laboratorio di Tecnologia Medica, Bologna, Italy
** Daniele Giunchi, SCS - B3C , Bologna Italy
** Paolo Quadrani, SCS - B3C , Bologna Italy
* Michael Onken, OFFIS DICOM Team, Oldenburg, Germany
* Nicholas Ayache, Sophia Antipolis, Inria, France
** Olivier Clatz, Sophia Antipolis, Inria, France
** Maxime Sermesant, Sophia Antipolis, Inria, France
** Pierre Fillard, Sophia Antipolis, Inria, France
* Gianluca Paladini, Siemens Corporate Research, Princeton, NJ, USA
* David Clunie, RadPharm, Princeton, NJ, USA

=Projects contributing to CTK=
{| style="text-align:center"
|[[File:3DSlicer_logo_en.png|200px|link=http://www.slicer.org]] [http://www.slicer.org 3D Slicer]
|[[File:Gimias_logo_en.png|200px|link=http://www.gimias.org]] [http://www.gimias.org Gimias]
|[[File:MAF3_logo_en.png|200px|link=https://www.biomedtown.org/biomed_town/maf3]] [https://www.biomedtown.org/biomed_town/maf3 Maf]
|[[File:MedInria.png|200px|link=http://med.inria.fr]] [http://med.inria.fr medInria]
|[[File:Mitk_logo_en.png|200px|link=http://www.mitk.org]] [http://www.mitk.org Mitk]
|}

=Grants, Fundings and Sponsors=
{|
|[[File:AFRL_logo.png|70px]] Air Force Research Laboratories under Phases I and II of the SBIR contract "[http://www.vtk.org/Wiki/Maverick Generating Labeled Voxelization for Numerical Simulation]," Topic: AF06-034, Contract #: FA8650-07-C-6756
|-
|[[File:ARRA_logo.png|70px]] [http://wiki.na-mic.org/Wiki/index.php/Projects:ARRA:SlicerUI ARRA supplement] to [http://nac.spl.harvard.edu NAC]
|-
|[[File:NAC_logo.gif|70px]] [http://nac.spl.harvard.edu Neuroimage Analysis Center]
|-
|[[File:NA-MIC_logo.jpg|70px]] [http://www.na-mic.org National Alliance for Medical Image Computing]
|-
|[[File:logo_vph.jpg|70px|link=http://www.vph-noe.eu/]] [http://www.vph-noe.eu/ Virtual Physiological Human Network of Excellence]
|}

The Team

2012-02-16T13:05:12Z

Msermesant: /* Institutions */

=Institutions=
{| cellspacing="20"
|[[File:Dkfz_logo_en.gif|200px|link=http://www.dkfz.de]]
|[[File:GeorgetownUniversity_logo_en.svg|200px|link=http://www.georgetown.edu/]]
|[[File:Kitware_logo_en.png|200px|link=http://www.kitware.com]]
|[[File:Inria.jpg|200px|link=http://www.inria.fr]]
|-
|[[File:Isomics_logo_en.png|200px|link=http://www.isomics.com]]
|[[File:Mannheim_logo_ge.png|200px|link=http://www.uni-mannheim.de]]
|[[File:Offis_logo_en.gif|200px|link=http://dicom.offis.de]]
|[[File:RadPharm_logo_en.jpg|200px]]
|-
|[[File:Siemens_logo_en.jpg|200px|link=http://www.usa.siemens.com/en/about_us/research/home.htm]]
|[[File:SPL_logo.gif|70px]][http://www.spl.harvard.edu Surgical Planning Laboratory]
|[[File:Upf_logo_it.gif|200px|link=http://www.upf.edu]]
|[[File:WashingtonUniversity_logo_en.png|200px|link=http://www.mir.wustl.edu/]]
|}

=Pro tempore steering committee=
* Hans-Peter Meinzer, German Cancer Research Center, Heidelberg, Germany ''(Catalyst of the CTK effort)''
* Ron Kikinis, Harvard Medical School, Boston, MA, USA ''(Meeting Chair)''
* Ivo Wolf, Mannheim University of Applied Sciences, Institute for Medical Informatics, Mannheim, Germany
* Marco Nolden, German Cancer Research Center, Heidelberg, Germany
* Steve Pieper, Isomics, Cambridge, MA, USA
* Kevin Cleary, Georgetown University, Washington DC, USA
** Patrick Cheng, Georgetown University, Washington DC, USA
** Ziv Yaniv, Georgetown University, Washington DC, USA
* Lawrence Tarbox, Mallinckrodt Institute of Radiology, St.Louis, MO, USA
* Stephen Aylward, Kitware Inc., Carborro, NC, USA
** Julien Finet, Kitware Inc.
** Jean-Christophe Fillion-Robin, Kitware Inc.
** Julien Jomier, Kitware Inc.
* Will Schroeder, Kitware Inc., Clifton Park, NY, USA
* Marco Viceconti, Laboratorio di Tecnologia Medica, Bologna, Italy
** Daniele Giunchi, SCS - B3C , Bologna Italy
** Paolo Quadrani, SCS - B3C , Bologna Italy
* Michael Onken, OFFIS DICOM Team, Oldenburg, Germany
* Nicholas Ayache, Sophia Antipolis, Inria, France
** Olivier Clatz, Sophia Antipolis, Inria, France
** Julien Wintz, Sophia Antipolis, Inria, France
** Pierre Fillard, Sophia Antipolis, Inria, France
* Gianluca Paladini, Siemens Corporate Research, Princeton, NJ, USA
* David Clunie, RadPharm, Princeton, NJ, USA

=Projects contributing to CTK=
{| style="text-align:center"
|[[File:3DSlicer_logo_en.png|200px|link=http://www.slicer.org]] [http://www.slicer.org 3D Slicer]
|[[File:Gimias_logo_en.png|200px|link=http://www.gimias.org]] [http://www.gimias.org Gimias]
|[[File:MAF3_logo_en.png|200px|link=https://www.biomedtown.org/biomed_town/maf3]] [https://www.biomedtown.org/biomed_town/maf3 Maf]
|[[File:MedInria.png|200px|link=http://med.inria.fr]] [http://med.inria.fr medInria]
|[[File:Mitk_logo_en.png|200px|link=http://www.mitk.org]] [http://www.mitk.org Mitk]
|}

=Grants, Fundings and Sponsors=
{|
|[[File:AFRL_logo.png|70px]] Air Force Research Laboratories under Phases I and II of the SBIR contract "[http://www.vtk.org/Wiki/Maverick Generating Labeled Voxelization for Numerical Simulation]," Topic: AF06-034, Contract #: FA8650-07-C-6756
|-
|[[File:ARRA_logo.png|70px]] [http://wiki.na-mic.org/Wiki/index.php/Projects:ARRA:SlicerUI ARRA supplement] to [http://nac.spl.harvard.edu NAC]
|-
|[[File:NAC_logo.gif|70px]] [http://nac.spl.harvard.edu Neuroimage Analysis Center]
|-
|[[File:NA-MIC_logo.jpg|70px]] [http://www.na-mic.org National Alliance for Medical Image Computing]
|-
|[[File:logo_vph.jpg|70px|link=http://www.vph-noe.eu/]] [http://www.vph-noe.eu/ Virtual Physiological Human Network of Excellence]
|}

File:Inria logo en.jpg

2012-02-16T13:04:36Z

Msermesant:

The Team

2012-02-16T09:26:55Z

Msermesant: /* Grants, Fundings and Sponsors */

=Institutions=
{| cellspacing="20"
|[[File:Dkfz_logo_en.gif|200px|link=http://www.dkfz.de]]
|[[File:GeorgetownUniversity_logo_en.svg|200px|link=http://www.georgetown.edu/]]
|[[File:Kitware_logo_en.png|200px|link=http://www.kitware.com]]
|[[File:Inria_logo_fr.png|200px|link=http://www.inria.fr]]
|-
|[[File:Isomics_logo_en.png|200px|link=http://www.isomics.com]]
|[[File:Mannheim_logo_ge.png|200px|link=http://www.uni-mannheim.de]]
|[[File:Offis_logo_en.gif|200px|link=http://dicom.offis.de]]
|[[File:RadPharm_logo_en.jpg|200px]]
|-
|[[File:Siemens_logo_en.jpg|200px|link=http://www.usa.siemens.com/en/about_us/research/home.htm]]
|[[File:SPL_logo.gif|70px]][http://www.spl.harvard.edu Surgical Planning Laboratory]
|[[File:Upf_logo_it.gif|200px|link=http://www.upf.edu]]
|[[File:WashingtonUniversity_logo_en.png|200px|link=http://www.mir.wustl.edu/]]
|}

=Pro tempore steering committee=
* Hans-Peter Meinzer, German Cancer Research Center, Heidelberg, Germany ''(Catalyst of the CTK effort)''
* Ron Kikinis, Harvard Medical School, Boston, MA, USA ''(Meeting Chair)''
* Ivo Wolf, Mannheim University of Applied Sciences, Institute for Medical Informatics, Mannheim, Germany
* Marco Nolden, German Cancer Research Center, Heidelberg, Germany
* Steve Pieper, Isomics, Cambridge, MA, USA
* Kevin Cleary, Georgetown University, Washington DC, USA
** Patrick Cheng, Georgetown University, Washington DC, USA
** Ziv Yaniv, Georgetown University, Washington DC, USA
* Lawrence Tarbox, Mallinckrodt Institute of Radiology, St.Louis, MO, USA
* Stephen Aylward, Kitware Inc., Carborro, NC, USA
** Julien Finet, Kitware Inc.
** Jean-Christophe Fillion-Robin, Kitware Inc.
** Julien Jomier, Kitware Inc.
* Will Schroeder, Kitware Inc., Clifton Park, NY, USA
* Marco Viceconti, Laboratorio di Tecnologia Medica, Bologna, Italy
** Daniele Giunchi, SCS - B3C , Bologna Italy
** Paolo Quadrani, SCS - B3C , Bologna Italy
* Michael Onken, OFFIS DICOM Team, Oldenburg, Germany
* Nicholas Ayache, Sophia Antipolis, Inria, France
** Olivier Clatz, Sophia Antipolis, Inria, France
** Julien Wintz, Sophia Antipolis, Inria, France
** Pierre Fillard, Sophia Antipolis, Inria, France
* Gianluca Paladini, Siemens Corporate Research, Princeton, NJ, USA
* David Clunie, RadPharm, Princeton, NJ, USA

=Projects contributing to CTK=
{| style="text-align:center"
|[[File:3DSlicer_logo_en.png|200px|link=http://www.slicer.org]] [http://www.slicer.org 3D Slicer]
|[[File:Gimias_logo_en.png|200px|link=http://www.gimias.org]] [http://www.gimias.org Gimias]
|[[File:MAF3_logo_en.png|200px|link=https://www.biomedtown.org/biomed_town/maf3]] [https://www.biomedtown.org/biomed_town/maf3 Maf]
|[[File:MedInria.png|200px|link=http://med.inria.fr]] [http://med.inria.fr medInria]
|[[File:Mitk_logo_en.png|200px|link=http://www.mitk.org]] [http://www.mitk.org Mitk]
|}

=Grants, Fundings and Sponsors=
{|
|[[File:AFRL_logo.png|70px]] Air Force Research Laboratories under Phases I and II of the SBIR contract "[http://www.vtk.org/Wiki/Maverick Generating Labeled Voxelization for Numerical Simulation]," Topic: AF06-034, Contract #: FA8650-07-C-6756
|-
|[[File:ARRA_logo.png|70px]] [http://wiki.na-mic.org/Wiki/index.php/Projects:ARRA:SlicerUI ARRA supplement] to [http://nac.spl.harvard.edu NAC]
|-
|[[File:NAC_logo.gif|70px]] [http://nac.spl.harvard.edu Neuroimage Analysis Center]
|-
|[[File:NA-MIC_logo.jpg|70px]] [http://www.na-mic.org National Alliance for Medical Image Computing]
|-
|[[File:logo_vph.jpg|70px|link=http://www.vph-noe.eu/]] [http://www.vph-noe.eu/ Virtual Physiological Human Network of Excellence]
|}

File:VPH logo en.jpg

2012-02-16T09:23:00Z

Msermesant:

The Team

2012-02-15T16:59:36Z

Msermesant: /* Projects contributing to CTK */

=Institutions=
{| cellspacing="20"
|[[File:Dkfz_logo_en.gif|200px]]
|[[File:GeorgetownUniversity_logo_en.svg|200px]]
|[[File:Kitware_logo_en.png|200px]]
|[[File:Inria_logo_fr.png|200px|link=http://www.inria.fr]]
|-
|[[File:Isomics_logo_en.png|200px]]
|[[File:Mannheim_logo_ge.png|200px]]
|[[File:Offis_logo_en.gif|200px]]
|[[File:RadPharm_logo_en.jpg|200px]]
|-
|[[File:Siemens_logo_en.jpg|200px]]
|[[File:SPL_logo.gif|70px]]Surgical Planning Laboratory
|[[File:Upf_logo_it.gif|200px]]
|[[File:WashingtonUniversity_logo_en.png|200px]]
|}

=Pro tempore steering committee=
* Hans-Peter Meinzer, German Cancer Research Center, Heidelberg, Germany ''(Catalyst of the CTK effort)''
* Ron Kikinis, Harvard Medical School, Boston, MA, USA ''(Meeting Chair)''
* Ivo Wolf, Mannheim University of Applied Sciences, Institute for Medical Informatics, Mannheim, Germany
* Marco Nolden, German Cancer Research Center, Heidelberg, Germany
* Steve Pieper, Isomics, Cambridge, MA, USA
* Kevin Cleary, Georgetown University, Washington DC, USA
** Patrick Cheng, Georgetown University, Washington DC, USA
** Ziv Yaniv, Georgetown University, Washington DC, USA
* Lawrence Tarbox, Mallinckrodt Institute of Radiology, St.Louis, MO, USA
* Stephen Aylward, Kitware Inc., Carborro, NC, USA
** Julien Finet, Kitware Inc.
** Jean-Christophe Fillion-Robin, Kitware Inc.
** Julien Jomier, Kitware Inc.
* Will Schroeder, Kitware Inc., Clifton Park, NY, USA
* Marco Viceconti, Laboratorio di Tecnologia Medica, Bologna, Italy
* Michael Onken, OFFIS DICOM Team, Oldenburg, Germany
* Nicholas Ayache, Sophia Antipolis, Inria, France
** Olivier Clatz, Sophia Antipolis, Inria, France
** Julien Wintz, Sophia Antipolis, Inria, France
** Pierre Fillard, Sophia Antipolis, Inria, France
* Gianluca Paladini, Siemens Corporate Research, Princeton, NJ, USA
* David Clunie, RadPharm, Princeton, NJ, USA

=Projects contributing to CTK=
{| style="text-align:center"
|[[File:3DSlicer_logo_en.png|200px]] [http://www.slicer.org 3D Slicer]
|[[File:MedInria.png|200px|link=http://med.inria.fr]] [http://med.inria.fr medInria]
|[[File:Gimias_logo_en.png|200px]] [http://www.gimias.org Gimias]
|[[File:MAF3_logo_en.png|200px]] [https://www.biomedtown.org/biomed_town/maf3 Maf]
|[[File:Mitk_logo_en.png|200px]] [http://www.mitk.org Mitk]
|}

=Grants, Fundings and Sponsors=
{|
|[[File:AFRL_logo.png|70px]] Air Force Research Laboratories under Phases I and II of the SBIR contract "[http://www.vtk.org/Wiki/Maverick Generating Labeled Voxelization for Numerical Simulation]," Topic: AF06-034, Contract #: FA8650-07-C-6756
|-
|[[File:ARRA_logo.png|70px]] [http://wiki.na-mic.org/Wiki/index.php/Projects:ARRA:SlicerUI ARRA supplement] to NAC
|}

The Team

2012-02-15T16:58:38Z

Msermesant: /* Projects contributing to CTK */

=Institutions=
{| cellspacing="20"
|[[File:Dkfz_logo_en.gif|200px]]
|[[File:GeorgetownUniversity_logo_en.svg|200px]]
|[[File:Kitware_logo_en.png|200px]]
|[[File:Inria_logo_fr.png|200px|link=http://www.inria.fr]]
|-
|[[File:Isomics_logo_en.png|200px]]
|[[File:Mannheim_logo_ge.png|200px]]
|[[File:Offis_logo_en.gif|200px]]
|[[File:RadPharm_logo_en.jpg|200px]]
|-
|[[File:Siemens_logo_en.jpg|200px]]
|[[File:SPL_logo.gif|70px]]Surgical Planning Laboratory
|[[File:Upf_logo_it.gif|200px]]
|[[File:WashingtonUniversity_logo_en.png|200px]]
|}

=Pro tempore steering committee=
* Hans-Peter Meinzer, German Cancer Research Center, Heidelberg, Germany ''(Catalyst of the CTK effort)''
* Ron Kikinis, Harvard Medical School, Boston, MA, USA ''(Meeting Chair)''
* Ivo Wolf, Mannheim University of Applied Sciences, Institute for Medical Informatics, Mannheim, Germany
* Marco Nolden, German Cancer Research Center, Heidelberg, Germany
* Steve Pieper, Isomics, Cambridge, MA, USA
* Kevin Cleary, Georgetown University, Washington DC, USA
** Patrick Cheng, Georgetown University, Washington DC, USA
** Ziv Yaniv, Georgetown University, Washington DC, USA
* Lawrence Tarbox, Mallinckrodt Institute of Radiology, St.Louis, MO, USA
* Stephen Aylward, Kitware Inc., Carborro, NC, USA
** Julien Finet, Kitware Inc.
** Jean-Christophe Fillion-Robin, Kitware Inc.
** Julien Jomier, Kitware Inc.
* Will Schroeder, Kitware Inc., Clifton Park, NY, USA
* Marco Viceconti, Laboratorio di Tecnologia Medica, Bologna, Italy
* Michael Onken, OFFIS DICOM Team, Oldenburg, Germany
* Nicholas Ayache, Sophia Antipolis, Inria, France
** Olivier Clatz, Sophia Antipolis, Inria, France
** Julien Wintz, Sophia Antipolis, Inria, France
** Pierre Fillard, Sophia Antipolis, Inria, France
* Gianluca Paladini, Siemens Corporate Research, Princeton, NJ, USA
* David Clunie, RadPharm, Princeton, NJ, USA

=Projects contributing to CTK=
{| style="text-align:center"
|[[File:3DSlicer_logo_en.png|200px]] [http://www.slicer.org 3D Slicer]
|[[File:MedInria.png|200px|link=http://med.inria.fr]] [http://med.inria.fr]
|[[File:Gimias_logo_en.png|200px]] [http://www.gimias.org Gimias]
|[[File:MAF3_logo_en.png|200px]] [https://www.biomedtown.org/biomed_town/maf3 Maf]
|[[File:Mitk_logo_en.png|200px]] [http://www.mitk.org Mitk]
|}

=Grants, Fundings and Sponsors=
{|
|[[File:AFRL_logo.png|70px]] Air Force Research Laboratories under Phases I and II of the SBIR contract "[http://www.vtk.org/Wiki/Maverick Generating Labeled Voxelization for Numerical Simulation]," Topic: AF06-034, Contract #: FA8650-07-C-6756
|-
|[[File:ARRA_logo.png|70px]] [http://wiki.na-mic.org/Wiki/index.php/Projects:ARRA:SlicerUI ARRA supplement] to NAC
|}

The Team

2012-02-15T16:58:09Z

Msermesant: /* Institutions */

=Institutions=
{| cellspacing="20"
|[[File:Dkfz_logo_en.gif|200px]]
|[[File:GeorgetownUniversity_logo_en.svg|200px]]
|[[File:Kitware_logo_en.png|200px]]
|[[File:Inria_logo_fr.png|200px|link=http://www.inria.fr]]
|-
|[[File:Isomics_logo_en.png|200px]]
|[[File:Mannheim_logo_ge.png|200px]]
|[[File:Offis_logo_en.gif|200px]]
|[[File:RadPharm_logo_en.jpg|200px]]
|-
|[[File:Siemens_logo_en.jpg|200px]]
|[[File:SPL_logo.gif|70px]]Surgical Planning Laboratory
|[[File:Upf_logo_it.gif|200px]]
|[[File:WashingtonUniversity_logo_en.png|200px]]
|}

=Pro tempore steering committee=
* Hans-Peter Meinzer, German Cancer Research Center, Heidelberg, Germany ''(Catalyst of the CTK effort)''
* Ron Kikinis, Harvard Medical School, Boston, MA, USA ''(Meeting Chair)''
* Ivo Wolf, Mannheim University of Applied Sciences, Institute for Medical Informatics, Mannheim, Germany
* Marco Nolden, German Cancer Research Center, Heidelberg, Germany
* Steve Pieper, Isomics, Cambridge, MA, USA
* Kevin Cleary, Georgetown University, Washington DC, USA
** Patrick Cheng, Georgetown University, Washington DC, USA
** Ziv Yaniv, Georgetown University, Washington DC, USA
* Lawrence Tarbox, Mallinckrodt Institute of Radiology, St.Louis, MO, USA
* Stephen Aylward, Kitware Inc., Carborro, NC, USA
** Julien Finet, Kitware Inc.
** Jean-Christophe Fillion-Robin, Kitware Inc.
** Julien Jomier, Kitware Inc.
* Will Schroeder, Kitware Inc., Clifton Park, NY, USA
* Marco Viceconti, Laboratorio di Tecnologia Medica, Bologna, Italy
* Michael Onken, OFFIS DICOM Team, Oldenburg, Germany
* Nicholas Ayache, Sophia Antipolis, Inria, France
** Olivier Clatz, Sophia Antipolis, Inria, France
** Julien Wintz, Sophia Antipolis, Inria, France
** Pierre Fillard, Sophia Antipolis, Inria, France
* Gianluca Paladini, Siemens Corporate Research, Princeton, NJ, USA
* David Clunie, RadPharm, Princeton, NJ, USA

=Projects contributing to CTK=
{| style="text-align:center"
|[[File:3DSlicer_logo_en.png|200px]] [http://www.slicer.org 3D Slicer]
|[[File:MedInria.png|200px]] [http://med.inria.fr]
|[[File:Gimias_logo_en.png|200px]] [http://www.gimias.org Gimias]
|[[File:MAF3_logo_en.png|200px]] [https://www.biomedtown.org/biomed_town/maf3 Maf]
|[[File:Mitk_logo_en.png|200px]] [http://www.mitk.org Mitk]
|}

=Grants, Fundings and Sponsors=
{|
|[[File:AFRL_logo.png|70px]] Air Force Research Laboratories under Phases I and II of the SBIR contract "[http://www.vtk.org/Wiki/Maverick Generating Labeled Voxelization for Numerical Simulation]," Topic: AF06-034, Contract #: FA8650-07-C-6756
|-
|[[File:ARRA_logo.png|70px]] [http://wiki.na-mic.org/Wiki/index.php/Projects:ARRA:SlicerUI ARRA supplement] to NAC
|}

The Team

2012-02-15T16:51:55Z

Msermesant: /* Projects contributing to CTK */

=Institutions=
{| cellspacing="20"
|[[File:Dkfz_logo_en.gif|200px]]
|[[File:GeorgetownUniversity_logo_en.svg|200px]]
|[[File:Kitware_logo_en.png|200px]]
|[[File:Inria_logo_fr.png|200px]]
|-
|[[File:Isomics_logo_en.png|200px]]
|[[File:Mannheim_logo_ge.png|200px]]
|[[File:Offis_logo_en.gif|200px]]
|[[File:RadPharm_logo_en.jpg|200px]]
|-
|[[File:Siemens_logo_en.jpg|200px]]
|[[File:SPL_logo.gif|70px]]Surgical Planning Laboratory
|[[File:Upf_logo_it.gif|200px]]
|[[File:WashingtonUniversity_logo_en.png|200px]]
|}
=Pro tempore steering committee=
* Hans-Peter Meinzer, German Cancer Research Center, Heidelberg, Germany ''(Catalyst of the CTK effort)''
* Ron Kikinis, Harvard Medical School, Boston, MA, USA ''(Meeting Chair)''
* Ivo Wolf, Mannheim University of Applied Sciences, Institute for Medical Informatics, Mannheim, Germany
* Marco Nolden, German Cancer Research Center, Heidelberg, Germany
* Steve Pieper, Isomics, Cambridge, MA, USA
* Kevin Cleary, Georgetown University, Washington DC, USA
** Patrick Cheng, Georgetown University, Washington DC, USA
** Ziv Yaniv, Georgetown University, Washington DC, USA
* Lawrence Tarbox, Mallinckrodt Institute of Radiology, St.Louis, MO, USA
* Stephen Aylward, Kitware Inc., Carborro, NC, USA
** Julien Finet, Kitware Inc.
** Jean-Christophe Fillion-Robin, Kitware Inc.
** Julien Jomier, Kitware Inc.
* Will Schroeder, Kitware Inc., Clifton Park, NY, USA
* Marco Viceconti, Laboratorio di Tecnologia Medica, Bologna, Italy
* Michael Onken, OFFIS DICOM Team, Oldenburg, Germany
* Nicholas Ayache, Sophia Antipolis, Inria, France
** Olivier Clatz, Sophia Antipolis, Inria, France
** Julien Wintz, Sophia Antipolis, Inria, France
** Pierre Fillard, Sophia Antipolis, Inria, France
* Gianluca Paladini, Siemens Corporate Research, Princeton, NJ, USA
* David Clunie, RadPharm, Princeton, NJ, USA

=Projects contributing to CTK=
{| style="text-align:center"
|[[File:3DSlicer_logo_en.png|200px]] [http://www.slicer.org 3D Slicer]
|[[File:MedInria.png|200px]] [http://med.inria.fr]
|[[File:Gimias_logo_en.png|200px]] [http://www.gimias.org Gimias]
|[[File:MAF3_logo_en.png|200px]] [https://www.biomedtown.org/biomed_town/maf3 Maf]
|[[File:Mitk_logo_en.png|200px]] [http://www.mitk.org Mitk]
|}

=Grants, Fundings and Sponsors=
{|
|[[File:AFRL_logo.png|70px]] Air Force Research Laboratories under Phases I and II of the SBIR contract "[http://www.vtk.org/Wiki/Maverick Generating Labeled Voxelization for Numerical Simulation]," Topic: AF06-034, Contract #: FA8650-07-C-6756
|-
|[[File:ARRA_logo.png|70px]] [http://wiki.na-mic.org/Wiki/index.php/Projects:ARRA:SlicerUI ARRA supplement] to NAC
|}

File:MedInria.png

2012-02-15T16:50:50Z

Msermesant: medInria Logo

medInria Logo

The Team

2012-02-15T16:47:17Z

Msermesant: /* Pro tempore steering committee */

=Institutions=
{| cellspacing="20"
|[[File:Dkfz_logo_en.gif|200px]]
|[[File:GeorgetownUniversity_logo_en.svg|200px]]
|[[File:Kitware_logo_en.png|200px]]
|[[File:Inria_logo_fr.png|200px]]
|-
|[[File:Isomics_logo_en.png|200px]]
|[[File:Mannheim_logo_ge.png|200px]]
|[[File:Offis_logo_en.gif|200px]]
|[[File:RadPharm_logo_en.jpg|200px]]
|-
|[[File:Siemens_logo_en.jpg|200px]]
|[[File:SPL_logo.gif|70px]]Surgical Planning Laboratory
|[[File:Upf_logo_it.gif|200px]]
|[[File:WashingtonUniversity_logo_en.png|200px]]
|}
=Pro tempore steering committee=
* Hans-Peter Meinzer, German Cancer Research Center, Heidelberg, Germany ''(Catalyst of the CTK effort)''
* Ron Kikinis, Harvard Medical School, Boston, MA, USA ''(Meeting Chair)''
* Ivo Wolf, Mannheim University of Applied Sciences, Institute for Medical Informatics, Mannheim, Germany
* Marco Nolden, German Cancer Research Center, Heidelberg, Germany
* Steve Pieper, Isomics, Cambridge, MA, USA
* Kevin Cleary, Georgetown University, Washington DC, USA
** Patrick Cheng, Georgetown University, Washington DC, USA
** Ziv Yaniv, Georgetown University, Washington DC, USA
* Lawrence Tarbox, Mallinckrodt Institute of Radiology, St.Louis, MO, USA
* Stephen Aylward, Kitware Inc., Carborro, NC, USA
** Julien Finet, Kitware Inc.
** Jean-Christophe Fillion-Robin, Kitware Inc.
** Julien Jomier, Kitware Inc.
* Will Schroeder, Kitware Inc., Clifton Park, NY, USA
* Marco Viceconti, Laboratorio di Tecnologia Medica, Bologna, Italy
* Michael Onken, OFFIS DICOM Team, Oldenburg, Germany
* Nicholas Ayache, Sophia Antipolis, Inria, France
** Olivier Clatz, Sophia Antipolis, Inria, France
** Julien Wintz, Sophia Antipolis, Inria, France
** Pierre Fillard, Sophia Antipolis, Inria, France
* Gianluca Paladini, Siemens Corporate Research, Princeton, NJ, USA
* David Clunie, RadPharm, Princeton, NJ, USA

=Projects contributing to CTK=
{| style="text-align:center"
|[[File:3DSlicer_logo_en.png|200px]] [http://www.slicer.org 3D Slicer]
|[[File:Dtk_logo.png|150px]] [http://www-sop.inria.fr/dream/Toolkit/Build DreamTk]
|[[File:Gimias_logo_en.png|200px]] [http://www.gimias.org Gimias]
|[[File:MAF3_logo_en.png|200px]] [https://www.biomedtown.org/biomed_town/maf3 Maf]
|[[File:Mitk_logo_en.png|200px]] [http://www.mitk.org Mitk]
|}

=Grants, Fundings and Sponsors=
{|
|[[File:AFRL_logo.png|70px]] Air Force Research Laboratories under Phases I and II of the SBIR contract "[http://www.vtk.org/Wiki/Maverick Generating Labeled Voxelization for Numerical Simulation]," Topic: AF06-034, Contract #: FA8650-07-C-6756
|-
|[[File:ARRA_logo.png|70px]] [http://wiki.na-mic.org/Wiki/index.php/Projects:ARRA:SlicerUI ARRA supplement] to NAC
|}