http://www.commontk.org/index.php?title=Documentation/Command_Line_Interface&feed=atom&action=history
Documentation/Command Line Interface - Revision history
2024-03-28T23:20:02Z
Revision history for this page on the wiki
MediaWiki 1.39.3
http://www.commontk.org/index.php?title=Documentation/Command_Line_Interface&diff=2298&oldid=prev
JChris.FillionR at 22:05, 4 November 2015
2015-11-04T22:05:10Z
<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:05, 4 November 2015</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Background Information / Specs ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Background Information / Specs ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Currently, the CLI module standard is documented as [http://www.slicer.org/slicerWiki/index.php/<del style="font-weight: bold; text-decoration: none;">Slicer3:Execution_Model_Documentation </del>Slicer's Execution Model]. There is an [https://github.com/commontk/CTK/blob/master/Libs/CommandLineModules/Core/Resources/ctkCmdLineModule.xsd XML schema definition] ([http://www.commontk.org/docs/html/ctkCmdLineModule.xsd auto-generated pretty-printed documentation]) that was created retroactively, and not all existing modules strictly follow the spec. However, one problem is that the schema definition does not facilitate to specify that e.g. the order of author and description elements is irrelevant, so the schema is more strict than the actual implementation in some respects (and less strict in some other).</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Currently, the CLI module standard is documented as [http://www.slicer.org/slicerWiki/index.php/<ins style="font-weight: bold; text-decoration: none;">Documentation/Nightly/Developers/SlicerExecutionModel </ins>Slicer's Execution Model]. There is an [https://github.com/commontk/CTK/blob/master/Libs/CommandLineModules/Core/Resources/ctkCmdLineModule.xsd XML schema definition] ([http://www.commontk.org/docs/html/ctkCmdLineModule.xsd auto-generated pretty-printed documentation]) that was created retroactively, and not all existing modules strictly follow the spec. However, one problem is that the schema definition does not facilitate to specify that e.g. the order of author and description elements is irrelevant, so the schema is more strict than the actual implementation in some respects (and less strict in some other).</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>You are welcome to join the [http://www.commontk.org/index.php/Getting_Started#CTK_mailing_list ctk-developers mailing list] for discussing related questions.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>You are welcome to join the [http://www.commontk.org/index.php/Getting_Started#CTK_mailing_list ctk-developers mailing list] for discussing related questions.</div></td></tr>
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JChris.FillionR
http://www.commontk.org/index.php?title=Documentation/Command_Line_Interface&diff=2286&oldid=prev
Hans Meine: add links to new bot-generated lists of Slicer extensions that can be filtered by type=cli
2014-12-26T21:36:07Z
<p>add links to new bot-generated lists of Slicer extensions that can be filtered by type=cli</p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 17:36, 26 December 2014</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l36">Line 36:</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Wherever feasible, Slicer developers are encouraged to encapsulate functionality as CLI modules.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Wherever feasible, Slicer developers are encouraged to encapsulate functionality as CLI modules.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [https://github.com/Slicer/Slicer/tree/master/Modules/CLI Source code of Slicer's CLI Modules]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [https://github.com/Slicer/Slicer/tree/master/Modules/CLI Source code of Slicer's CLI Modules]</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* Many [http://slicer.kitware.com/midas3/slicerappstore?os=win&arch=amd64&revision=23777&category=&search=&layout=layout Slicer extensions] provide command line modules (unfortunately, ATM, it is not possible yet to query only CLI modules).</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* Many [http://slicer.kitware.com/midas3/slicerappstore?os=win&arch=amd64&revision=23777&category=&search=&layout=layout Slicer extensions] provide command line modules (unfortunately, ATM, it is not possible yet to query only CLI modules<ins style="font-weight: bold; text-decoration: none;">, but there are now [http://wiki.slicer.org/slicerWiki/index.php/User:UpdateBot/Issue-2843-Consolidated-Extension-List auto-generated lists] that can be [http://wiki.slicer.org/slicerWiki/index.php/User:UpdateBot/Issue-2843-Consolidated-Extension-List/4.4#cli filtered by type=cli]</ins>).</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* The [http://www.nitrc.org/projects/slicer NITRC.org project for 3D Slicer] lists associations to software packages that interoperate with Slicer, and many of these consist of one or more CLI modules.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* The [http://www.nitrc.org/projects/slicer NITRC.org project for 3D Slicer] lists associations to software packages that interoperate with Slicer, and many of these consist of one or more CLI modules.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://sourceforge.net/projects/niftyreg/ niftyreg] contains registration algorithms (from UCL, hosted on SF.net).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://sourceforge.net/projects/niftyreg/ niftyreg] contains registration algorithms (from UCL, hosted on SF.net).</div></td></tr>
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Hans Meine
http://www.commontk.org/index.php?title=Documentation/Command_Line_Interface&diff=2278&oldid=prev
Hans Meine: link to new ctk_cli package
2014-11-11T10:38:41Z
<p>link to new ctk_cli package</p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 06:38, 11 November 2014</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The Slicer documentation also contains instructions on [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Modules how to extend Slicer via CLI modules] or other means.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The Slicer documentation also contains instructions on [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Modules how to extend Slicer via CLI modules] or other means.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>If you want to implement a Python-based solution, you might also be interested in [https://github.com/<del style="font-weight: bold; text-decoration: none;">hmeine</del>/<del style="font-weight: bold; text-decoration: none;">MeVisLab</del>-<del style="font-weight: bold; text-decoration: none;">CLI</del>/<del style="font-weight: bold; text-decoration: none;">tree</del>/<del style="font-weight: bold; text-decoration: none;">master</del>/<del style="font-weight: bold; text-decoration: none;">Modules</del>/<del style="font-weight: bold; text-decoration: none;">Scripts/python </del>the <del style="font-weight: bold; text-decoration: none;">code available on GitHub</del>] that was developed as part of the [http://www.na-mic.org/Wiki/index.php/2013_Summer_Project_Week:CLI_modules_in_MeVisLab CLI integration in MeVisLab] during the NA-MIC summer project week 2013.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>If you want to implement a Python-based solution, you might also be interested in [https://github.com/<ins style="font-weight: bold; text-decoration: none;">commontk</ins>/<ins style="font-weight: bold; text-decoration: none;">ctk</ins>-<ins style="font-weight: bold; text-decoration: none;">cli the code available on GitHub] and [https:</ins>//<ins style="font-weight: bold; text-decoration: none;">pypi.python.org</ins>/<ins style="font-weight: bold; text-decoration: none;">pypi</ins>/<ins style="font-weight: bold; text-decoration: none;">ctk-cli </ins>the <ins style="font-weight: bold; text-decoration: none;">Python Package Index</ins>] that was developed as part of the [http://www.na-mic.org/Wiki/index.php/2013_Summer_Project_Week:CLI_modules_in_MeVisLab CLI integration in MeVisLab] during the NA-MIC summer project week 2013.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Examples of CLI Modules ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Examples of CLI Modules ==</div></td></tr>
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Hans Meine
http://www.commontk.org/index.php?title=Documentation/Command_Line_Interface&diff=2277&oldid=prev
Hans Meine: mention niftyreg
2014-11-11T10:36:13Z
<p>mention niftyreg</p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 06:36, 11 November 2014</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l38">Line 38:</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Many [http://slicer.kitware.com/midas3/slicerappstore?os=win&arch=amd64&revision=23777&category=&search=&layout=layout Slicer extensions] provide command line modules (unfortunately, ATM, it is not possible yet to query only CLI modules).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Many [http://slicer.kitware.com/midas3/slicerappstore?os=win&arch=amd64&revision=23777&category=&search=&layout=layout Slicer extensions] provide command line modules (unfortunately, ATM, it is not possible yet to query only CLI modules).</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* The [http://www.nitrc.org/projects/slicer NITRC.org project for 3D Slicer] lists associations to software packages that interoperate with Slicer, and many of these consist of one or more CLI modules.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* The [http://www.nitrc.org/projects/slicer NITRC.org project for 3D Slicer] lists associations to software packages that interoperate with Slicer, and many of these consist of one or more CLI modules.</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* [http://sourceforge.net/projects/niftyreg/ niftyreg] contains registration algorithms (from UCL, hosted on SF.net).</ins></div></td></tr>
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Hans Meine
http://www.commontk.org/index.php?title=Documentation/Command_Line_Interface&diff=2267&oldid=prev
Hans Meine: /* Examples of CLI Modules */
2014-11-07T09:19:45Z
<p><span dir="auto"><span class="autocomment">Examples of CLI Modules</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 05:19, 7 November 2014</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Examples of CLI Modules ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Examples of CLI Modules ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">* </del>Wherever feasible, Slicer developers are encouraged to encapsulate functionality as CLI modules.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Wherever feasible, Slicer developers are encouraged to encapsulate functionality as CLI modules.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">*</del>* [https://github.com/Slicer/Slicer/tree/master/Modules/CLI Source code of Slicer's CLI Modules]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [https://github.com/Slicer/Slicer/tree/master/Modules/CLI Source code of Slicer's CLI Modules]</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">*</del>* Many [http://slicer.kitware.com/midas3/slicerappstore?os=win&arch=amd64&revision=23777&category=&search=&layout=layout Slicer extensions] provide command line modules.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* Many [http://slicer.kitware.com/midas3/slicerappstore?os=win&arch=amd64&revision=23777&category=&search=&layout=layout Slicer extensions] provide command line modules <ins style="font-weight: bold; text-decoration: none;">(unfortunately, ATM, it is not possible yet to query only CLI modules)</ins>.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">*</del>* The [http://www.nitrc.org/projects/slicer NITRC.org project for 3D Slicer] lists associations to software packages that interoperate with Slicer, and many of these consist of one or more CLI modules.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* The [http://www.nitrc.org/projects/slicer NITRC.org project for 3D Slicer] lists associations to software packages that interoperate with Slicer, and many of these consist of one or more CLI modules.</div></td></tr>
</table>
Hans Meine
http://www.commontk.org/index.php?title=Documentation/Command_Line_Interface&diff=2258&oldid=prev
Pieper: /* Creating your own CLI modules */
2014-11-06T11:17:31Z
<p><span dir="auto"><span class="autocomment">Creating your own CLI modules</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 07:17, 6 November 2014</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l31">Line 31:</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>If you want to implement a Python-based solution, you might also be interested in [https://github.com/hmeine/MeVisLab-CLI/tree/master/Modules/Scripts/python the code available on GitHub] that was developed as part of the [http://www.na-mic.org/Wiki/index.php/2013_Summer_Project_Week:CLI_modules_in_MeVisLab CLI integration in MeVisLab] during the NA-MIC summer project week 2013.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>If you want to implement a Python-based solution, you might also be interested in [https://github.com/hmeine/MeVisLab-CLI/tree/master/Modules/Scripts/python the code available on GitHub] that was developed as part of the [http://www.na-mic.org/Wiki/index.php/2013_Summer_Project_Week:CLI_modules_in_MeVisLab CLI integration in MeVisLab] during the NA-MIC summer project week 2013.</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">== Examples of CLI Modules ==</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* Wherever feasible, Slicer developers are encouraged to encapsulate functionality as CLI modules.</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">** [https://github.com/Slicer/Slicer/tree/master/Modules/CLI Source code of Slicer's CLI Modules]</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">** Many [http://slicer.kitware.com/midas3/slicerappstore?os=win&arch=amd64&revision=23777&category=&search=&layout=layout Slicer extensions] provide command line modules.</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">** The [http://www.nitrc.org/projects/slicer NITRC.org project for 3D Slicer] lists associations to software packages that interoperate with Slicer, and many of these consist of one or more CLI modules.</ins></div></td></tr>
</table>
Pieper
http://www.commontk.org/index.php?title=Documentation/Command_Line_Interface&diff=2248&oldid=prev
Hans Meine: link to mailing list
2014-11-05T10:55:24Z
<p>link to mailing list</p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 06:55, 5 November 2014</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l19">Line 19:</td>
<td colspan="2" class="diff-lineno">Line 19:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Currently, the CLI module standard is documented as [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation Slicer's Execution Model]. There is an [https://github.com/commontk/CTK/blob/master/Libs/CommandLineModules/Core/Resources/ctkCmdLineModule.xsd XML schema definition] ([http://www.commontk.org/docs/html/ctkCmdLineModule.xsd auto-generated pretty-printed documentation]) that was created retroactively, and not all existing modules strictly follow the spec. However, one problem is that the schema definition does not facilitate to specify that e.g. the order of author and description elements is irrelevant, so the schema is more strict than the actual implementation in some respects (and less strict in some other).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Currently, the CLI module standard is documented as [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation Slicer's Execution Model]. There is an [https://github.com/commontk/CTK/blob/master/Libs/CommandLineModules/Core/Resources/ctkCmdLineModule.xsd XML schema definition] ([http://www.commontk.org/docs/html/ctkCmdLineModule.xsd auto-generated pretty-printed documentation]) that was created retroactively, and not all existing modules strictly follow the spec. However, one problem is that the schema definition does not facilitate to specify that e.g. the order of author and description elements is irrelevant, so the schema is more strict than the actual implementation in some respects (and less strict in some other).</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">You are welcome to join the [http://www.commontk.org/index.php/Getting_Started#CTK_mailing_list ctk-developers mailing list] for discussing related questions.</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>TODO: The standard (Slicer execution model description) should probably be moved to the CTK domain.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>TODO: The standard (Slicer execution model description) should probably be moved to the CTK domain.</div></td></tr>
</table>
Hans Meine
http://www.commontk.org/index.php?title=Documentation/Command_Line_Interface&diff=2247&oldid=prev
Hans Meine: /* Creating your own CLI modules */
2014-11-05T10:53:17Z
<p><span dir="auto"><span class="autocomment">Creating your own CLI modules</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<col class="diff-content" />
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 06:53, 5 November 2014</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l27">Line 27:</td>
<td colspan="2" class="diff-lineno">Line 27:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The Slicer documentation also contains instructions on [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Modules how to extend Slicer via CLI modules] or other means.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The Slicer documentation also contains instructions on [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Modules how to extend Slicer via CLI modules] or other means.</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">If you want to implement a Python-based solution, you might also be interested in [https://github.com/hmeine/MeVisLab-CLI/tree/master/Modules/Scripts/python the code available on GitHub] that was developed as part of the [http://www.na-mic.org/Wiki/index.php/2013_Summer_Project_Week:CLI_modules_in_MeVisLab CLI integration in MeVisLab] during the NA-MIC summer project week 2013.</ins></div></td></tr>
</table>
Hans Meine
http://www.commontk.org/index.php?title=Documentation/Command_Line_Interface&diff=2245&oldid=prev
Hans Meine: /* Background Information / Specs */
2014-11-05T10:37:31Z
<p><span dir="auto"><span class="autocomment">Background Information / Specs</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 06:37, 5 November 2014</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Background Information / Specs ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Background Information / Specs ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Currently, the CLI module standard is documented as [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation Slicer's Execution Model]. There is an [https://github.com/commontk/CTK/blob/master/Libs/CommandLineModules/Core/Resources/ctkCmdLineModule.xsd XML schema definition] ([http://www.commontk.org/docs/html/ctkCmdLineModule.xsd auto-generated pretty-printed documentation]) that was created retroactively, and not all existing modules strictly follow the spec. However, one problem is that <del style="font-weight: bold; text-decoration: none;">XSL </del>does not facilitate to specify that e.g. the order of author and description elements is irrelevant, so the schema is more strict than the actual implementation in some respects.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Currently, the CLI module standard is documented as [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation Slicer's Execution Model]. There is an [https://github.com/commontk/CTK/blob/master/Libs/CommandLineModules/Core/Resources/ctkCmdLineModule.xsd XML schema definition] ([http://www.commontk.org/docs/html/ctkCmdLineModule.xsd auto-generated pretty-printed documentation]) that was created retroactively, and not all existing modules strictly follow the spec. However, one problem is that <ins style="font-weight: bold; text-decoration: none;">the schema definition </ins>does not facilitate to specify that e.g. the order of author and description elements is irrelevant, so the schema is more strict than the actual implementation in some respects <ins style="font-weight: bold; text-decoration: none;">(and less strict in some other)</ins>.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>TODO: The standard (Slicer execution model description) should probably be moved to the CTK domain.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>TODO: The standard (Slicer execution model description) should probably be moved to the CTK domain.</div></td></tr>
</table>
Hans Meine
http://www.commontk.org/index.php?title=Documentation/Command_Line_Interface&diff=2244&oldid=prev
Hans Meine at 10:36, 5 November 2014
2014-11-05T10:36:08Z
<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 06:36, 5 November 2014</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>;More information on CTK's support for CLI modules:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>;More information on CTK's support for CLI modules:</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>: There is [http://www.commontk.org/docs/html/CommandLineModules_Page.html<del style="font-weight: bold; text-decoration: none;">|</del>a well-written page in the Doxygen docs] (and a [http://www.commontk.org/docs/html/group__CommandLineModules__Group.html<del style="font-weight: bold; text-decoration: none;">|</del>group for the classes]), as well as [[Documentation/CLI Support in CTK|a separate wiki page]].</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>: There is [http://www.commontk.org/docs/html/CommandLineModules_Page.html a well-written page in the Doxygen docs] (and a [http://www.commontk.org/docs/html/group__CommandLineModules__Group.html group for the classes]), as well as [[Documentation/CLI Support in CTK|a separate wiki page]].</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>== Example Applications <del style="font-weight: bold; text-decoration: none;">=</del>==</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>== Example Applications ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>CLI modules are already supported by a number of host applications, e.g. 3D Slicer, NiftyView / MITK Workbench, GIMIAS, MedInria, MeVisLab, nipype and more. You can see some examples on the [[Documentation/CLI_In_Context|CLI In Context]] page.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>CLI modules are already supported by a number of host applications, e.g. 3D Slicer, NiftyView / MITK Workbench, GIMIAS, MedInria, MeVisLab, nipype and more. You can see some examples on the [[Documentation/CLI_In_Context|CLI In Context]] page.</div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Background Information / Specs ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Background Information / Specs ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Currently, the CLI module standard is documented as [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation<del style="font-weight: bold; text-decoration: none;">|</del>Slicer's Execution Model]. <del style="font-weight: bold; text-decoration: none;">The </del>XML schema was created retroactively, and not all existing modules strictly follow the spec. However, one problem is that XSL does not facilitate to specify that e.g. the order of author and description elements is irrelevant, so the schema is more strict than the actual implementation in some respects.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Currently, the CLI module standard is documented as [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation Slicer's Execution Model]. <ins style="font-weight: bold; text-decoration: none;">There is an [https://github.com/commontk/CTK/blob/master/Libs/CommandLineModules/Core/Resources/ctkCmdLineModule.xsd </ins>XML schema <ins style="font-weight: bold; text-decoration: none;">definition] ([http://www.commontk.org/docs/html/ctkCmdLineModule.xsd auto-generated pretty-printed documentation]) that </ins>was created retroactively, and not all existing modules strictly follow the spec. However, one problem is that XSL does not facilitate to specify that e.g. the order of author and description elements is irrelevant, so the schema is more strict than the actual implementation in some respects.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>TODO: The standard (Slicer execution model description) should probably be moved to the CTK domain.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>TODO: The standard (Slicer execution model description) should probably be moved to the CTK domain.</div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Creating your own CLI modules ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Creating your own CLI modules ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Additional resources </del>that <del style="font-weight: bold; text-decoration: none;">may </del>help you <del style="font-weight: bold; text-decoration: none;">to implement </del>new CLIs </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">There is a [https://github.com/Slicer/SlicerExecutionModel "SlicerExecutionModel"] project at GitHub </ins>that <ins style="font-weight: bold; text-decoration: none;">shall </ins>help you <ins style="font-weight: bold; text-decoration: none;">with implementing </ins>new CLIs<ins style="font-weight: bold; text-decoration: none;">, e.g. by offering means to '''automatically parse commandline arguments''' based on the XML spec.</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>The Slicer documentation http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Modules</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>The Slicer documentation <ins style="font-weight: bold; text-decoration: none;">also contains instructions on [</ins>http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Modules <ins style="font-weight: bold; text-decoration: none;">how to extend Slicer via CLI modules] or other means.</ins></div></td></tr>
</table>
Hans Meine