CTK-Hackfest-Dec-2012: Difference between revisions

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== Event pictures ==
== Event pictures ==
Images from the hackfest
Images from the hackfest
{|
<gallery widths=300 px heights=200px perrow=3>
|}
image:Bologna-2012-12-12 16.55.22.jpg|<big>Bologna as seen from Asinelli tower</big>
image:CTK-Hackfest-2012-Bologna-Palazzo D Accursio.jpg|<big>Visiting Bologna</big>
image:Bologna-2012-12-12 17.23.11.jpg|<big>Julien taking the photo of everyone else</big>
image:DSC02729.JPG|<big>Presenting results</big>
image:DSC02730.JPG|<big>Exchanging ideas</big>
image:DSC02727.JPG|<big>Hacking</big>
image:DSC02726.JPG|<big>... and hacking</big>
</gallery>


== Introduction ==
== Introduction ==


'''Date:''' December 10-114, 2012
'''Date:''' December 10-14, 2012


'''Location:''' @TBA, Bologna, Italy
'''Location:''' [http://www.iporticihotel.com/en | Hotel i Portici] in Via Indipendenza , Bologna, Italy, Sala Montagnola (Room)


'''Goal:''' A follow on to the [[Commontk:Current_events#Past_events|wildly successful previous hackfests!]]
'''Goal:''' A follow on to the [[Commontk:Current_events#Past_events|wildly successful previous hackfests!]]
Line 23: Line 30:


== Attendees ==
== Attendees ==
*So far we have received confirmation for the following people (in no particular order). Please fill in your intentions in terms of common accommodation.
*So far we have received confirmation for the following people (in no particular order).  
 
'''WE HAVE REACHED THE MAXIMUM NUMBER OF PARTECIPANT - REGISTRATION CLOSED - 16 PARTECIPANTS
'''
 
Please fill in your intentions in terms of common accommodation.


{|class="wikitable alternance" style="text-align:left; border:1px solid black;"
{|class="wikitable alternance" style="text-align:left; border:1px solid black;"
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! scope=col style="background:#cde6f8;"| Organization
! scope=col style="background:#cde6f8;"| Organization
|-
|-
|  
|Alessandro Chiarini
|  
|SCS, Bologna IT
|-
|Daniele Giunchi
|SCS, Bologna IT
|-
|Alberto Losi
|SCS, Bologna IT
|-
|Steve Pieper
|Isomics, Inc., Cambridge, MA, USA
|-
| Ivo Wolf
| Mannheim University of Applied Sciences & DKFZ Heidelberg
|-
| Jean-Chistophe Fillion-Robin
| Kitware
|-
| Julien Finet
| Kitware
|-
| Andreas Fetzer
| DKFZ Heidelberg
|-
| Michael Bauer
| DKFZ Heidelberg
|-
| Marco Nolden
| DKFZ Heidelberg
|-
| Sascha Zelzer
| DKFZ Heidelberg
|-
| Florian Vichot
| INRIA
|-
| Yves Martelli
| UPF
|-
| Claire Mouton
| CREATIS
|-
| Miklos Espak
| University College London (UCL)
|-
| Luca Antiga
| Orobix
|-
|-
|}
|}
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! scope=col style="background:#cde6f8;"| Name
! scope=col style="background:#cde6f8;"| Name
! scope=col style="background:#cde6f8;"| Organization
! scope=col style="background:#cde6f8;"| Organization
|-
 
|}
|}
-->
-->
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== Topics and Projects ==
== Topics and Projects ==
<!--
 
==== Roadmap development ====
<!--==== Roadmap development ====
*As needed, refine the [[CTK-Roadmap|roadmap for the CTK core]].
*As needed, refine the [[CTK-Roadmap|roadmap for the CTK core]].-->


==== DICOM Application Hosting ====
==== DICOM Application Hosting ====
Line 74: Line 131:


* Dig into ongoing developments.  See [[CtkDICOM]] for discussion.
* Dig into ongoing developments.  See [[CtkDICOM]] for discussion.
** Review [https://github.com/SlicerRt/CTK/commits/slicerRT-patches patches provided by the SlicerRT team]
* See CTK DICOM support is used in Slicer 4.2
** Performance Optimization (loadHeader in ctkDICOMDatabase)
** [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/DICOM End-user documentation]
** [http://na-mic.org/Bug/search.php?project_id=3&category=Module+DICOM&sticky_issues=on&sortby=last_updated&dir=DESC&hide_status_id=90 Slicer4 DICOM Bugs and Feature Requests]
** SlicerRT Issues:
*** https://www.assembla.com/spaces/slicerrt/tickets/25 - display of ^ (carat character) in ctkDICOMModel
*** https://www.assembla.com/spaces/slicerrt/tickets/153 - extension import failure (slicer issue)
*** https://www.assembla.com/spaces/slicerrt/tickets/36 - non-uniform study information in RT files


* See [[ctkDICOM in Slicer4]] for information on a particular application use case.
==== QAT ====
* [http://na-mic.org/Bug/search.php?project_id=3&search=dicom&category=DICOM&status_id%5B%5D=10&status_id%5B%5D=20&status_id%5B%5D=30&status_id%5B%5D=40&status_id%5B%5D=50&sticky_issues=off&sortby=last_updated&dir=DESC&hide_status_id=-2 Slicer4 DICOM Bugs and Feature Requests]
Quality Assurance Toolkit -> how to integrate in CTK


==== Widgets ====
==== Widgets ====
Line 90: Line 152:
==== Build Systems & Software process ====
==== Build Systems & Software process ====


* <del>Update PythonQt dependency so that CTK can build against Qt 4.8</del>
<!--* <del>Update PythonQt dependency so that CTK can build against Qt 4.8</del>
** <del>See [https://github.com/pieper/PythonQt/tree/svn-mirror this experiment] to make a ctk-compatible version of the updated PythonQt - it works, but is not yet fully patched.</del>
** <del>See [https://github.com/pieper/PythonQt/tree/svn-mirror this experiment] to make a ctk-compatible version of the updated PythonQt - it works, but is not yet fully patched.</del>
** <del>[http://my.cdash.org/viewBuildError.php?buildid=362919 Some operator overloading issues in DAH]</del>
** <del>[http://my.cdash.org/viewBuildError.php?buildid=362919 Some operator overloading issues in DAH]</del>
Line 96: Line 158:
** Updated CTK: [https://github.com/commontk/CTK/issues/189 #189], [https://github.com/commontk/CTK/issues/157 #157] {{done}}
** Updated CTK: [https://github.com/commontk/CTK/issues/189 #189], [https://github.com/commontk/CTK/issues/157 #157] {{done}}
** Updated Slicer [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=20601 r20601] {{done}}
** Updated Slicer [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=20601 r20601] {{done}}
** Added [https://github.com/commontk/PythonQt#readme documentation] on PythonQt.  {{done}}
** Added [https://github.com/commontk/PythonQt#readme documentation] on PythonQt.  {{done}}-->




Line 106: Line 168:
*** build ctk against head or snapshot version
*** build ctk against head or snapshot version


* Prepare Debian packaging (Marco)
** Resolve outstanding issues
** Make CTK also build with latest stable DCMTK release (3.6.0)
* Evaluate Qt5 (Sascha)


* <del>Setup developer package</del>
* <del>Setup developer package</del>
Line 112: Line 179:




* <del>Talk with Dominique (Debian packager) to understand what is missing</del> See https://github.com/commontk/CTK/pull/158
<!-- * <del>Talk with Dominique (Debian packager) to understand what is missing</del> See https://github.com/commontk/CTK/pull/158
** <del>Build from upstream PythonQt (to be done this week)</del> {{done}} Few patches still need to be contributed upstream. See [https://github.com/commontk/PythonQt#readme documentation]
** <del>Build from upstream PythonQt (to be done this week)</del> {{done}} Few patches still need to be contributed upstream. See [https://github.com/commontk/PythonQt#readme documentation]-->
** Release a version of CTK (Work on policy this week and maybe release this week).
** Release a version of CTK (Work on policy this week and maybe release this week).


* <del>Generalize documentation of CMake macro so that it can be-used.</del>
<!--* <del>Generalize documentation of CMake macro so that it can be-used.</del>-->
** Work in progress - See [https://github.com/jcfr/CTK/compare/master...cmake-doxygen-filter-reuse cmake-doxygen-filter-reuse]
** Work in progress - See [https://github.com/jcfr/CTK/compare/master...cmake-doxygen-filter-reuse cmake-doxygen-filter-reuse]


Line 123: Line 190:
** Unify VPH and Slicer refactoring
** Unify VPH and Slicer refactoring
* Qt SEM XML widget
* Qt SEM XML widget
* Follow on interoperability tests done in [[CLI_In_Context]]
* Refine CLI XML standard
** Text format for description/help/acknowledgement/resources: plain text ? html ? structured text ? github markup ?
** Multiple categories per module ?
** CLI XML versioning.


[[Bologna Hackfest:Cmd Line Module Work Items|Cmd Line Module Work Items]]
-->
== Agenda ==
== Agenda ==


==== Monday ====
==== Monday ====
<!--Start at 9:00am
<!--Start at 9:00am
Arrive and get settled in the morning. Discussion of plans for the week will get underway when everyone has arrived.
Arrive and get settled in the morning. Discussion of plans for the week will get underway when everyone has arrived.
Review of goals and ideas-->
 
10:30am Welcome
 
10:45 - 12:00 Round table: everyone presents 10-15 minutes how CTK is used in their project. And what's new in CTK (what has been added since previous hackfest)
 
: CTK in use:
:* MSVTK: [http://www.msvtk.org/content/electro-physiological-dataset-application ECG], HAI, Buttons (DG/AL, JF) (10m)
:** Give your feedback: http://www.msvtk.org/content/evaluation
:* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DICOM DICOM in Slicer] (SP) (5m)
:* [http://www.commontk.org/index.php/Documentation/CLI_In_Context CLI in Gimias, MITK, NiftyView, Slicer] (SZ, YM, ME) (10m)
:* CTK in MITK (MN) (5m)
: What's new since last hackfest?
:* [http://www.commontk.org/index.php/Documentation/Command_Line_Interface CLI] in CTK (SZ, YM) (15m)
:* DICOM Tag caching (SP) (5m)
:* [http://www.commontk.org/index.php/Documentation/ImageGallery Widgets improvements] in CTK(JF, JCFR) (5m)
:** New: ctkExpandableWidget/ctkSizeGrip, ctkPathListWidget
:** Tweaks: ctkCoordinatesWidget (normalized), ctkPathLineEdit (sizeHint), ctkPanelSettings (user/revision settings), 
 
1:00pm Lunch
 
: Discuss plans/priorities for hacking
 
3:30pm Coffee Break
 
hack, hack, hack...
 
5:00pm Close


Review of goals and ideas-->
==== Tuesday ====
==== Tuesday ====
<!--hack, hack, hack...-->
<!--hack, hack, hack...-->
9:30am Welcome
* Review of Topics and demos
11:00am Coffee Break
* Discussion of goals for the week and breakout into working groups
* Command Line Module Working Group Topics
** Using ctk CLI infrastructure in Slicer (Jc, Sascha, Julien)
** CLI Incremental Communication (Luca, Steve)
** MAF CLI Integration (Daniele, Alberto)
** PythonQt wrapping of ctkCLI
** DAH and CLI (Ivo)
** CLI Compatibility Testing (Yves)
** CLI In MedINRIA (Florian)
* CTK Qt Testing and Quality Assurance Toolkit (Claire, Andreas, Julien, Jc)
* Transfer function interaction (Julien, Florian)
** Publish previous CTK hackfest work into VTK
** Minor interaction tweaks
1:00pm Lunch
hack, hack, hack...
5:00pm Close
hack, hack, hack...
==== Wednesday ====
==== Wednesday ====
<!--Review of progress-->
<!--Review of progress-->
9:30am Welcome
hack, hack, hack...
11:00am Coffee Break
hack, hack, hack...
1:00pm Lunch
hack, hack, hack...
5:00pm Close
==== Thursday ====
==== Thursday ====
<!--Hack, hack, hack...-->
<!--Hack, hack, hack...-->
9:30am Welcome
hack, hack, hack...
11:00am Coffee Break
hack, hack, hack...
1:00pm Lunch
hack, hack, hack...
5:00pm Close


==== Friday ====
==== Friday ====
<!--* 10:30 Review hacking progress
 
*Tour of [http://ncigt.org/pages/AMIGO AMIGO].
9:30am Welcome
** Leave 1249 by 12:00. Stop for lunch on the way and meet Isaiah at AMIGO at 2:00.
 
** Turn in badges - do not plan to return to 1249.
hack, hack, hack...
End by 5:00pm-->
 
 
11:00am Coffee Break
 
Wrap up discussion and presentations:
* Alberto, Allesandro (for Daniele)
**MAF2,3 migration
*** Use CTK command line module explorer as MAF3 Plugin
*** Wrap MAF2 modules as CLIs
*** Solution to the WXWidgets (MAF2) to Qt (MAF3) migration with uniform solution
** QAT running on CTK source code, working to make it more widely available
** Migrating MAF plugins to CTK plugins
* Claire
** Fixing configuration issues, to be improved by JCFR : https://github.com/commontk/CTK/issues/258
** Fixing compilation issues, merged to CTK master branch : https://github.com/commontk/CTK/issues/268
** Fixed a bug in QtTesting, merged to CTK master branch : https://github.com/commontk/CTK/issues/269
** Working with Qt Testing and QAT for CREATIS (working to migrate to Qt)
** Will report back in Lyon
* Miklos
** XNAT Plugin replacing curl with Qt network and ssl
** Working with Jc on REST API implementation generalized across MIDAS and XNAT
** With Sascha and Jc: updates to the build system to support plugins - new superrepository that has git submodules for optional plugins
* Sascha
** Superrepository and build system (see issue [https://github.com/commontk/CTK/issues/266 #266] and its corresponding [https://github.com/commontk/CTK/tree/266-checkout-repositories-at-build-time branch])
** Looked into Qt5 (see issue [https://github.com/commontk/CTK/issues/277 #277] and the [https://github.com/commontk/CTK/tree/qt5 qt5 branch])
*** some ifdefs required for deprecated functions
* Andreas
** Putting Qt Testing into MITK
** Some issues being sorted out
* Marco
** Debian packaging
*** dcmtk 3.6.0 build compatibility (with remote help from Michael Onken)
*** Some debian specific patches in a separate branch
***vtk 5.8 compatibility
*** aim for named version release CTK within 6 months (for debian/ubuntu release)
* Michael
** Fixed selection of query results for retrieval
** Refactoring Query and Retrieve
*** New ctkDICOMOperation (superclass)
*** May rename some widgets for consistency
* Florian
** CLI modules now work in MedINRIA!
*** Interface is generated
*** command line executable can be run
*** Looking at specializations of GUI to support MedINRIA concepts
** Fixes to some Qt style / css compatibility issues
** Issue is reported to Qt, and now will be included in Qt 5.1
* Ivo
** DICOM Application Hosting
*** Updated dah branch to the latest master
*** Embedded dah into MITK
*** MITK as hosted application
*** ...and MITK as a host!
* Yves
** New tests for CLIs
*** CLI finishes with error
*** CLI checks that defaults are as expected
*** CLI checks that image data passed from host is the same as when read from disk
** Code could go into Slicer Execution Model repository, for now it is there: https://github.com/ivmartel/semit
* Julien
** Lookup table editor
*** layers of lookup tables
*** Combine and edit layers independently
*** Integrates Florian's work from Boston hackfest
** Issues of ordering of XML for XML Schema comptibility
* Jc
** Build system work
** Shared library backend for CLI framework
** Updated XSD / XSL to handle additional element
** Integrated CTK CLI module framework to Slicer
*** Still uses Slicer custom logic for execution
*** Delegates to custom widgets for specific data types (extra XSL definitions)
* Steve
** DICOM Bug fixes (with Marco)
*** Name displays
*** Encoding crashes
** Command Line Module Widget - stand alone widget configured with CLI XML
*** Test version with subclassed module reference: https://github.com/pieper/CTK/tree/cli-widget-reference-subclass
*** improved version using QtGui subclass: https://github.com/pieper/CTK/tree/cli-widget
*** [https://github.com/pieper/CTK/blob/8391b2f54e18e68e6672a4d3a54da38bc9c77b79/Libs/CommandLineModules/Widgets/Testing/Cpp/ctkCmdLineModuleWidgetTest1.cpp#L86 working test code for the module]
* Luca
** Work on refactoring GenerateCLP into a more dynamic structure to support incremental CLI
** https://github.com/lantiga/CLIInterface
 
 
1:00pm Lunch
 
hack, hack, hack...
 
* Reminder: Update project status on wiki
** Links to branches, repositories, bug reports
** Screen captures of progress to the Gallery below
** Action photos of hacking in progress...
 
== Gallery of Results ==
 
<gallery widths=300 px heights=200px perrow=3>
Image:Cli-widget-prototype-2012-12-14.png|[https://github.com/pieper/CTK/blob/8391b2f54e18e68e6672a4d3a54da38bc9c77b79/Libs/CommandLineModules/Widgets/Testing/Cpp/ctkCmdLineModuleWidgetTest1.cpp#L86 Example widget generated from XML description.]
Image:VtkCompositeControlPointsStack.png|Layers in VTK charts for transfer function edition.
Image:MedInria-cli.png|Command-line module integration in medInria
Image:MITKasHostedApp-and-asHost-withCLIasHostedApp.jpg|MITK running as DICOM Application Hosting hosted application (hosted by ctkDICOMHost) as well as hosting system with CTK-CLI as hosted application
</gallery>


== Travel & Hotel ==
== Travel & Hotel ==


'''Local contact'''
'''Local contact'''
<!--* If you have any troubles during your visit, call Daniele: +39 348 7269365  or Alessandro: +39 342 1401554-->
If you have any troubles during your visit, call Alessandro: +39 342 1401554 or Daniele: +39 348 7260365


'''Airport'''  
'''Airport'''  
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'''Transportation on Site'''
'''Transportation on Site'''
Airport Shuttle from airport to Railway Station (near to meeting location) 6 euro, link: http://www.atc.bo.it/orari/aerobus-airport-railway-station-link
Taxi  from airport to Railway Station 15-20 euro


<!--Google's public transit search works well in Bologna.  The site is about 5 blocks from subway stops and busses.  Parking on-site is $10-$15 per day.  Cabs are fairly convenient for most trips (perhaps $40 to/from the airport but $10-$15 for trips within town).-->
<!--Google's public transit search works well in Bologna.  The site is about 5 blocks from subway stops and busses.  Parking on-site is $10-$15 per day.  Cabs are fairly convenient for most trips (perhaps $40 to/from the airport but $10-$15 for trips within town).-->
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There are a lot of hotel options in Bologna.
There are a lot of hotel options in Bologna.


<!--
Millennium Hotel[http://www.millennhotelbologna.it/en/index.html]: close to the centre and to the central railways station.
* Closest, cheapest, but least nice:
 
Star Hotel [http://www.starhotels.com/hotels/excelsior/en/home.aspx]: close to the centre and in front of the central railways station.


Howard Johnsons
Mercure Hotel [http://www.accorhotels.com/it/hotel-1310-mercure-bologna-centro/index.shtml] (Italian link, you need to find the page on your language from the Accor portal) In front of the central railways station.
1271 Boylston Street
Boston, MA 02215
(800) 446-4656
howardjohnsonboston.com‎


* Not too far - mid price:
Albergo Atlantic [http://www.albergoatlantic.net/ENGLISH/index.html] In the city centre, 10' walking time from the central railways station.


Boston Hotel Buckminster
I Portici Hotel [http://www.iporticihotel.com/en/i-portici-hotel-bologna]10' walking time from the central railways station.  
645 Beacon Street
Boston, MA 02215
(800) 727-2825
bostonhotelbuckminster.com‎


* Not too far - higher price:


Hotel Commonwealth
500 Commonwealth Avenue
Boston, MA 02215
(617) 933-5000
hotelcommonwealth.com‎
->>


'''Meeting Location'''  
'''Meeting Location'''  
<!--* [http://www.spl.harvard.edu/pages/Directions#Getting_to_1249_Boylston_Street. BWH Surgical Planning Laboratory] [http://maps.google.com/maps?q=1249+boylston+street+boston+ma+02215&hl=en&hnear=1249+Boylston+St,+Boston,+Massachusetts+02215&gl=us&t=m&z=16 1249 Boylston Street].-->
<!--* [http://www.spl.harvard.edu/pages/Directions#Getting_to_1249_Boylston_Street. BWH Surgical Planning Laboratory] [http://maps.google.com/maps?q=1249+boylston+street+boston+ma+02215&hl=en&hnear=1249+Boylston+St,+Boston,+Massachusetts+02215&gl=us&t=m&z=16 1249 Boylston Street].-->
TBA
TBA We are finding a meeting venue that could be in the city centre or in the central station area.


'''Catering'''
'''Catering'''


* To be determined.
It will be provided by the meeting venue.  


'''Weather'''
'''Weather'''


* Probably cold
* Probably not sunny, colder than Italian average :-), even it is quite variable, temperatures can range from 0°C to 10°C (min) and from 5°C to 20°C.

Latest revision as of 11:03, 24 May 2013

Home < CTK-Hackfest-Dec-2012

Event pictures

Images from the hackfest

  • Bologna as seen from Asinelli tower

    Bologna as seen from Asinelli tower

  • Visiting Bologna

    Visiting Bologna

  • Julien taking the photo of everyone else

    Julien taking the photo of everyone else

  • Presenting results

    Presenting results

  • Exchanging ideas

    Exchanging ideas

  • Hacking

    Hacking

  • ... and hacking

    ... and hacking

Introduction

Date: December 10-14, 2012

Location: | Hotel i Portici in Via Indipendenza , Bologna, Italy, Sala Montagnola (Room)

Goal: A follow on to the wildly successful previous hackfests!

Requirements: Attendees must be willing to spend their time during the event writing ctk code that contributes to the main ctk roadmap. This means spending the week immersed in C++, Qt, DCMTK, CMake, and related technologies. People who do not feel qualified for this task are politely not invited :)

Group size: Maximum 20 participants so we can have a manageable working meeting. The organizing committee will invite and select participants based on input from TheTeam.

Site Hosts: Alessandro Chiarini, Daniele Giunchi

Organizing Committee: Ivo Wolf, Stephen Aylward, Steve Pieper

Future Events: Future hackfests will be announced in advance, and we hope lots of people will be interested in participating. The venue and activities at future hackfests will be determined based on the number of active participants in the project. We welcome participation via the CTK email lists, the source code repository, and this website.

Attendees

  • So far we have received confirmation for the following people (in no particular order).

WE HAVE REACHED THE MAXIMUM NUMBER OF PARTECIPANT - REGISTRATION CLOSED - 16 PARTECIPANTS

Please fill in your intentions in terms of common accommodation.

Participants
Name Organization
Alessandro Chiarini SCS, Bologna IT
Daniele Giunchi SCS, Bologna IT
Alberto Losi SCS, Bologna IT
Steve Pieper Isomics, Inc., Cambridge, MA, USA
Ivo Wolf Mannheim University of Applied Sciences & DKFZ Heidelberg
Jean-Chistophe Fillion-Robin Kitware
Julien Finet Kitware
Andreas Fetzer DKFZ Heidelberg
Michael Bauer DKFZ Heidelberg
Marco Nolden DKFZ Heidelberg
Sascha Zelzer DKFZ Heidelberg
Florian Vichot INRIA
Yves Martelli UPF
Claire Mouton CREATIS
Miklos Espak University College London (UCL)
Luca Antiga Orobix


Note Note: There were also other invitations sent to active people on the community, and people who recently showed interest. When their intent will be known they will be added to the list.

Preparation

Developers should bring a laptop with the current CTK source code downloaded and built.

Use the CTK developers mailing list to discuss build issues and topics for ongoing work.

Phone conferences have been scheduled in the weeks leading to the event:

  • To be announced

Topics and Projects

DICOM Application Hosting

DICOM Database and Networking

QAT

Quality Assurance Toolkit -> how to integrate in CTK

Widgets

Tests Framework

Try QtTesting with CTK applications

Build Systems & Software process

  • Update to latest DCMTK
    • includes dcmrt
    • need to pick a commit to standardize on
    • investigate shared/static library building. (Static instances of classes getting destructed in wrong order)
    • incorporate version checking
      • build ctk against head or snapshot version
  • Prepare Debian packaging (Marco)
    • Resolve outstanding issues
    • Make CTK also build with latest stable DCMTK release (3.6.0)
  • Evaluate Qt5 (Sascha)


    • Release a version of CTK (Work on policy this week and maybe release this week).

Command Line Modules

  • Extract CLI interface
    • Unify VPH and Slicer refactoring
  • Qt SEM XML widget
  • Follow on interoperability tests done in CLI_In_Context
  • Refine CLI XML standard
    • Text format for description/help/acknowledgement/resources: plain text ? html ? structured text ? github markup ?
    • Multiple categories per module ?
    • CLI XML versioning.

Agenda

Monday

10:30am Welcome

10:45 - 12:00 Round table: everyone presents 10-15 minutes how CTK is used in their project. And what's new in CTK (what has been added since previous hackfest)

CTK in use:
What's new since last hackfest?
  • CLI in CTK (SZ, YM) (15m)
  • DICOM Tag caching (SP) (5m)
  • Widgets improvements in CTK(JF, JCFR) (5m)
    • New: ctkExpandableWidget/ctkSizeGrip, ctkPathListWidget
    • Tweaks: ctkCoordinatesWidget (normalized), ctkPathLineEdit (sizeHint), ctkPanelSettings (user/revision settings),

1:00pm Lunch

Discuss plans/priorities for hacking

3:30pm Coffee Break

hack, hack, hack...

5:00pm Close

Tuesday

9:30am Welcome

  • Review of Topics and demos

11:00am Coffee Break

  • Discussion of goals for the week and breakout into working groups
  • Command Line Module Working Group Topics
    • Using ctk CLI infrastructure in Slicer (Jc, Sascha, Julien)
    • CLI Incremental Communication (Luca, Steve)
    • MAF CLI Integration (Daniele, Alberto)
    • PythonQt wrapping of ctkCLI
    • DAH and CLI (Ivo)
    • CLI Compatibility Testing (Yves)
    • CLI In MedINRIA (Florian)
  • CTK Qt Testing and Quality Assurance Toolkit (Claire, Andreas, Julien, Jc)
  • Transfer function interaction (Julien, Florian)
    • Publish previous CTK hackfest work into VTK
    • Minor interaction tweaks

1:00pm Lunch

hack, hack, hack...

5:00pm Close

hack, hack, hack...

Wednesday

9:30am Welcome

hack, hack, hack...


11:00am Coffee Break

hack, hack, hack...


1:00pm Lunch

hack, hack, hack...


5:00pm Close

Thursday

9:30am Welcome

hack, hack, hack...


11:00am Coffee Break

hack, hack, hack...


1:00pm Lunch

hack, hack, hack...


5:00pm Close

Friday

9:30am Welcome

hack, hack, hack...


11:00am Coffee Break

Wrap up discussion and presentations:

  • Alberto, Allesandro (for Daniele)
    • MAF2,3 migration
      • Use CTK command line module explorer as MAF3 Plugin
      • Wrap MAF2 modules as CLIs
      • Solution to the WXWidgets (MAF2) to Qt (MAF3) migration with uniform solution
    • QAT running on CTK source code, working to make it more widely available
    • Migrating MAF plugins to CTK plugins
  • Claire
  • Miklos
    • XNAT Plugin replacing curl with Qt network and ssl
    • Working with Jc on REST API implementation generalized across MIDAS and XNAT
    • With Sascha and Jc: updates to the build system to support plugins - new superrepository that has git submodules for optional plugins
  • Sascha
    • Superrepository and build system (see issue #266 and its corresponding branch)
    • Looked into Qt5 (see issue #277 and the qt5 branch)
      • some ifdefs required for deprecated functions
  • Andreas
    • Putting Qt Testing into MITK
    • Some issues being sorted out
  • Marco
    • Debian packaging
      • dcmtk 3.6.0 build compatibility (with remote help from Michael Onken)
      • Some debian specific patches in a separate branch
      • vtk 5.8 compatibility
      • aim for named version release CTK within 6 months (for debian/ubuntu release)
  • Michael
    • Fixed selection of query results for retrieval
    • Refactoring Query and Retrieve
      • New ctkDICOMOperation (superclass)
      • May rename some widgets for consistency
  • Florian
    • CLI modules now work in MedINRIA!
      • Interface is generated
      • command line executable can be run
      • Looking at specializations of GUI to support MedINRIA concepts
    • Fixes to some Qt style / css compatibility issues
    • Issue is reported to Qt, and now will be included in Qt 5.1
  • Ivo
    • DICOM Application Hosting
      • Updated dah branch to the latest master
      • Embedded dah into MITK
      • MITK as hosted application
      • ...and MITK as a host!
  • Yves
    • New tests for CLIs
      • CLI finishes with error
      • CLI checks that defaults are as expected
      • CLI checks that image data passed from host is the same as when read from disk
    • Code could go into Slicer Execution Model repository, for now it is there: https://github.com/ivmartel/semit
  • Julien
    • Lookup table editor
      • layers of lookup tables
      • Combine and edit layers independently
      • Integrates Florian's work from Boston hackfest
    • Issues of ordering of XML for XML Schema comptibility
  • Jc
    • Build system work
    • Shared library backend for CLI framework
    • Updated XSD / XSL to handle additional element
    • Integrated CTK CLI module framework to Slicer
      • Still uses Slicer custom logic for execution
      • Delegates to custom widgets for specific data types (extra XSL definitions)
  • Steve
  • Luca


1:00pm Lunch

hack, hack, hack...

  • Reminder: Update project status on wiki
    • Links to branches, repositories, bug reports
    • Screen captures of progress to the Gallery below
    • Action photos of hacking in progress...

Gallery of Results

  • Layers in VTK charts for transfer function edition.

    Layers in VTK charts for transfer function edition.

  • Command-line module integration in medInria

    Command-line module integration in medInria

  • MITK running as DICOM Application Hosting hosted application (hosted by ctkDICOMHost) as well as hosting system with CTK-CLI as hosted application

    MITK running as DICOM Application Hosting hosted application (hosted by ctkDICOMHost) as well as hosting system with CTK-CLI as hosted application

Travel & Hotel

Local contact If you have any troubles during your visit, call Alessandro: +39 342 1401554 or Daniele: +39 348 7260365

Airport

Transportation on Site

Airport Shuttle from airport to Railway Station (near to meeting location) 6 euro, link: http://www.atc.bo.it/orari/aerobus-airport-railway-station-link

Taxi from airport to Railway Station 15-20 euro


Lodging

There are a lot of hotel options in Bologna.

Millennium Hotel[1]: close to the centre and to the central railways station.

Star Hotel [2]: close to the centre and in front of the central railways station.

Mercure Hotel [3] (Italian link, you need to find the page on your language from the Accor portal) In front of the central railways station.

Albergo Atlantic [4] In the city centre, 10' walking time from the central railways station.

I Portici Hotel [5]10' walking time from the central railways station.


Meeting Location TBA We are finding a meeting venue that could be in the city centre or in the central station area.

Catering

It will be provided by the meeting venue.

Weather

  • Probably not sunny, colder than Italian average :-), even it is quite variable, temperatures can range from 0°C to 10°C (min) and from 5°C to 20°C.
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